tellurium Logo
latest
  • Installation
  • Quick Start
  • Walkthrough
  • Usage Examples
  • Antimony Reference
  • Parameter Scan
  • Tellurium Methods
  • API
  • libRoadRunner Documents
  • SimpleSBML Documents
  • FAQ
  • Appendix
tellurium
  • Docs »
  • Welcome to tellurium’s documentation!
  • Edit on GitHub

Welcome to tellurium’s documentation!¶

Model, simulate, and analyse biochemical systems using a single tool. To view the documentation on libRoadRunner, please go here.

Supported by NIGMS R01-GM123032

Contents:

  • Installation
    • Installation Options
  • Quick Start
    • Simple Example
    • More Complex Example
  • Walkthrough
    • Notebook Walkthrough
    • Advanced Topics
    • Notebook Troubleshooting
    • Further Reading
    • IDE Walkthrough
    • Advanced Topics on Tellurium Spyder
    • Tellurium Spyder Troubleshooting
    • Further Reading
    • Additional Resources for Tellurium
    • Learning Python
  • Usage Examples
    • Basics
    • Models & Model Building
    • Simulation and Analysis Methods
    • SED-ML
    • COMBINE & Inline OMEX
    • Modeling Case Studies
    • Miscellaneous
  • Antimony Reference
    • Contents
    • Background
    • Change Log
    • Introduction and Basics
    • Model Elements
    • Simulating Models
    • Language Reference
    • Appendix: Converting between SBML and Antimony
    • Further Reading
  • Parameter Scan
    • Loading a Model
    • Class Methods
    • Example
    • Properties
    • SteadyStateScan
  • Tellurium Methods
    • Installing Packages
    • Utility Methods
    • Model Loading
    • Interconversion Utilities
    • Export Utilities
    • Stochastic Simulation
    • Math
    • ODE Extraction Methods
    • Plotting
    • Model Reset
    • jarnac Short-cuts
    • Test Models
    • Running external tools
    • Model Methods
  • API
  • libRoadRunner Documents
  • SimpleSBML Documents
  • FAQ
  • Appendix
    • Source Code Repositories
    • License
    • Contact
    • Funding
    • Acknowledgments

Indices and tables¶

  • Index
  • Module Index
  • Search Page
Next

© Copyright 2014-2021, Andy Somogyi, Kiri Choi, J Kyle Medley, Matthias König, Kaylene Stocking, Caroline Cannistra, Wilbert Copeland, Michal Galdzicki, and Herbert Sauro Revision f58d30cc.

Built with Sphinx using a theme provided by Read the Docs.
Read the Docs v: latest
Versions
latest
param-est
develop
Downloads
On Read the Docs
Project Home
Builds

Free document hosting provided by Read the Docs.