Source code for tellurium.notebooks.notebooktools

# coding: utf-8
"""
Utilities to work with ipython notebooks.
"""
from __future__ import print_function, division

import io
import os
import sys
import types
import IPython
from IPython.core.interactiveshell import InteractiveShell


[docs]def find_notebook(fullname, path=None): """ Find a notebook, given its fully qualified name and an optional path. This turns "foo.bar" into "foo/bar.ipynb" and tries turning "Foo_Bar" into "Foo Bar" if Foo_Bar does not exist. :param fullname: name of notebook (without .ipynb extension) :type fullname: str :param path: relative path information for search :type path: str :return: path of notebook :rtype: str """ name = fullname.rsplit('.', 1)[-1] if not path: path = [''] for d in path: nb_path = os.path.join(d, name + ".ipynb") if os.path.isfile(nb_path): return nb_path # let import Notebook_Name find "Notebook Name.ipynb" nb_path = nb_path.replace("_", " ") if os.path.isfile(nb_path): return nb_path
[docs]class NotebookLoader(object): """ Module Loader for IPython Notebooks. """ def __init__(self, path=None): self.shell = InteractiveShell.instance() self.path = path
[docs] def load_module(self, fullname): """ Import a notebook as a module. """ path = find_notebook(fullname, self.path) print ("importing IPython notebook from %s" % path) # load the notebook object with io.open(path, 'r', encoding='utf-8') as f: nb = IPython.nbformat.read(f, IPython.nbformat.NO_CONVERT) # create the module and add it to sys.modules # if name in sys.modules: # return sys.modules[name] mod = types.ModuleType(fullname) mod.__file__ = path mod.__loader__ = self sys.modules[fullname] = mod # extra work to ensure that magics that would affect the user_ns # actually affect the notebook module's ns save_user_ns = self.shell.user_ns self.shell.user_ns = mod.__dict__ try: for cell in nb.worksheets[0].cells: if cell.cell_type == 'code' and cell.language == 'python': # transform the input to executable Python code = self.shell.input_transformer_manager.transform_cell( cell.input ) # run the code in themodule exec(code, mod.__dict__) finally: self.shell.user_ns = save_user_ns return mod
[docs]class NotebookFinder(object): """Module finder that locates IPython Notebooks""" def __init__(self): self.loaders = {}
[docs] def find_module(self, fullname, path=None): nb_path = find_notebook(fullname, path) if not nb_path: return key = path if path: # lists aren't hashable key = os.path.sep.join(path) if key not in self.loaders: self.loaders[key] = NotebookLoader(path) return self.loaders[key]
[docs]def loadNotebooksAsModules(): sys.meta_path.append(NotebookFinder())
[docs]def sideBySideOutput(): print(''' For side-by-side output, add this to a new cell: %%html <style> div.cell {box-orient:horizontal;flex-direction:row;} div.cell *{width:100%;}div.prompt{width:80px;}</style> ''')