Welcome to tellurium’s documentation!

Model, simulate, and analyse biochemical systems using a single tool.

Contents:

• Installation and Front-ends
  • Installation Options
• Quick Start
  • Simple Example
  • More Complex Example
• Walkthrough
  • Notebook Walkthrough
  • Notebook Troubleshooting
  • IDE Walkthrough
  • Additional Resources for Tellurium
  • Learning Python
• Usage Examples
  • Basics
  • Models & Model Building
  • SED-ML
  • COMBINE & Inline OMEX
  • Modeling Case Studies
• Antimony Reference
  • Background
  • Change Log
  • Contents
  • Introduction & Basics
  • Examples
  • Simulating Models
  • Language Reference
• Parallel Programming
  • Tellurium in Distributed Environment
  • Getting Started
  • Your First Stochastic Simulation
  • Parameter Estimation
  • Parameter Scanning
• Tellurium Methods
  • Installing Packages
  • Utility Methods
  • Model Loading
  • Interconversion Utilities
  • Export Utilities
  • Stochastic Simulation
  • Distributed Stochastic Simulation
  • Distributed Stochastic Simulation Utility
  • Plot Distributed Stochastic Simulation Results
  • Distributed Parameter Scanning
  • Plotting Image of Parameter Scan
  • Distributed Sensitivity Analysis
  • Distributed Sensitivity Analysis Utility
  • Math
  • Plotting
  • Model Reset
  • jarnac Short-cuts
  • Test Models
  • Model Methods
• API
• FAQ
• Appendix
  • Source Code Repositories
  • License
  • Contact
  • Funding
  • Acknowledgments

Indices and tables

• Index
• Module Index
• Search Page